Scaffold Ga0222712_10002024

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10002024
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23959
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043361	Metagenome / Metatranscriptome	156	Y
F074413	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100020243	F043361	GAG	MEPDLSEELASLVRRLYATEVMRSADEAGGVRLSFISNNRLYQITVQTEDRPTEFTLSAGSANPFMEAPSGLMQGFVRQMRVRYPSVVFAPGGPHGADFGASTHGQKFPGLPLQAEFLRCKQAIDLCLDGISAVISELEGD
Ga0222712_100020248	F074413	GAG	MTTPRFCNCYQDQEIGLSPKSTRLVFKAVMFHGSGHDEEHRIRIGSDDEGKWDVLWLSTNWGEGTVPLVWVAKGSLRGRALWTGLVQAWFLGSKVAKDAAAPPCDEYTRADHALLDEESVQAIVEQVWPENVDSEG