Scaffold Ga0222712_10001886

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001886
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25000
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (47.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F015864	Metagenome / Metatranscriptome	251	Y
F029416	Metagenome / Metatranscriptome	188	Y
F055721	Metagenome / Metatranscriptome	138	Y
F098925	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100018861	F098925	N/A	MATITRASASLASGVIEHLAGTLATADKKLKECEAECARIKSQIIDEMIAADIKSERTCWGLVSLTSRDKVTYSDEIACLEIDLKAAKSKEVKMGIAQVTEGDKFIRVTWTK
Ga0222712_1000188616	F029416	GGA	MSNTLSRNIYRALFSDDQWDLIYAMAGHALDNDDFAPEDVYSIRNKIHALFDEE
Ga0222712_1000188619	F015864	N/A	MNIAELDEFLYEKCREDPDLLSTIINEYLGSLSESKLDELQDFLTNNFGDN
Ga0222712_1000188620	F001968	N/A	MYDELWSEIQDAPGEIFDIPEMQDNEDFNFDEYLKGDYDY
Ga0222712_1000188648	F055721	AGG	MVNKEEYYKYIEGKDTYPSHSHKWIVRTYIDSYDGAVEEFYRNFGTFETKEEAKEFIRNYKVKYTTKGFITKYHIQPLCEVL