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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10001811 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25600 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (78.38%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002099 | Metagenome / Metatranscriptome | 593 | Y |
| F016519 | Metagenome / Metatranscriptome | 246 | N |
| F051078 | Metagenome / Metatranscriptome | 144 | N |
| F085678 | Metagenome | 111 | Y |
| F091938 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1000181110 | F051078 | AGGA | MDSSTSLKPNDIALILRPTIVDGKYTNNFQVLVSGFGPLTISEDDVNNLIGMATILAATVQYMEEDEALANKLVEYCGKMFGDIGDISYNANHDSFGDGSFTINTKTIGGIQ |
| Ga0222712_1000181115 | F085678 | AGGA | MNVMMLEEHEDGSATYSFDLTMEERDILLSLGIMTAIKNGIKEGKQYVGNTDLGYTKCGTPDSVHGEGEQPRESGQP |
| Ga0222712_1000181119 | F091938 | N/A | MIVVELRQGIGIDIEFNDTICHIIDDGGPQDKLFSYSGILIKLPFLSIYIGEFEEIGELIKGDKPTGK |
| Ga0222712_1000181121 | F016519 | N/A | MATKRFDKELHDTYDKFGRDIVKSYVSSFWDMEARDNPDRYGIDLHLYKDDLLVGYAEVEVRLSWKTVEFPYEDLNVPNRKKKLLTQDMLTYFFSVNKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYVVLPTAS |
| Ga0222712_1000181132 | F002099 | N/A | MKWVIAALLIVSLLVSAAEDKCSVRQFYGIAYTIHNPSERHLQMSAWLTNHEGFCSSKDMVVIWNNLSEWAGAADSAEIRHKVVRAYKMAIEREKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |