Scaffold Ga0222712_10001697

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001697
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26550
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (88.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F001713	Metagenome	648	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014589	Metagenome	261	Y
F056607	Metagenome	137	Y
F102704	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100016971	F014589	GGTGG	MTTIRLQMPTDKNLLAQWAKNLLNDDFFKEVIDNLKKEQISVIINTSAEECDRREDAYRHIKSI
Ga0222712_1000169716	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMEYEQDEDGTYNENISDVIYEKVSLMGLFTDAQFKELEMEGTMRLTSHLLAEADHAKIMAYEHD
Ga0222712_100016972	F102704	GAG	MNYQELVSLVGGNNPQSATYEDIVSGIQSQYRPQTQFAPTTSLLDMIGTQLPDQPRIAYGSLLQALPRVLPTPMTAVKNTDAAASVDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNTSNVDSGLFGTKVTGTDIANVAGTVAPIAALAGNSDLVKTAIALNLIGSAADIKTEADVLNLGTKIAMLAAGPAGNVIAAGLGLASDNTPMTVNALLGLTNPTLNLVNQISGNLTGYTIGDIVNGLLNTPEGTVGEYGLLGAANLAGTADASRRRAGAAYDSMDANTLRVLAELGDQEAIATIRSITSGGTSTFNPIADLGTARGNSYFNLFTPVANSGGSGGKFVDDNYSVTNA
Ga0222712_1000169720	F001097	GGA	MNFQWDIDDSRRTRTLQKLRSQRVDTQVQPKEIDDWLKQSVALVAGSVRGLATNQRRIRYFGFEGKNEQTKE
Ga0222712_1000169729	F002487	N/A	MITRQDAIKDLSHDDYCCYCTEPKGDKYVCCSENHFVPFEDLYDEDKEAMIEEYLSKGN
Ga0222712_100016973	F056607	GAGG	MATAPVYYSDQLVKEFIDKEFAGKTGDALYQAVANEAVNRGVSAEQLGRVLGFDTSAVNQYATNIGKPLVAEAKVLDTVIDNAYNQQFGRDATEAEKANAKTYLTTGGNSLAGTGALNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSEMAKLGYDPFNASVLGTAKNLSANVAALESDPFAGRYANVNPYGTYDLSTMTTKLDSTLPNISKNVSGNVVQFINPVTQQPIVTSFVDGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLEQAQSNSTGVQALVDKIAAENGGRLPANFSVGALAQANKVPFQFGQDVYNKAYATDAGQRINTLAKTPTTPLNFNPANIYQPPIVAGQMRELFPSFGESKRLAQGLINERPTTQSIVNMIQGLPADNSLGLNTMQNNVVGAPTSLNNVLGLIAK