Scaffold Ga0222712_10001487

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001487
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28902
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (35.59%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F045713	Metagenome / Metatranscriptome	152	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000148719	F082606	N/A	MSLIALTAQCSGMVAPVIKPSQQVYKMSPNRMGVRAERTLWRFNAGMPCYVRGWPQYEATVVERARDCSWPTYIVENMDGTRYLISQLYLSKRPIETR
Ga0222712_1000148720	F036214	N/A	MDDNAWEWMLVKRDPSDSFQIEKQARQLEITPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMDYQRDQAGT
Ga0222712_1000148721	F097251	N/A	MIILTDSQVLELNNRIGQIQRLIESAQVIKGGTAQPKAVTEAATPKPVVARKARRMRARRVGLREHQVIEIKQRLAAGGESCQKIANDYGVHVTTVNAIKNNKIWKTVQVPA
Ga0222712_1000148732	F038601	N/A	MKLYAPENKGKYVWQTADAKTRAVSYSVTSSRTPPADACYGHPMGKYDDTGLYMTFCPNVGADDPKSPQAARYVLHPMAGAERDRADRDRLWREI
Ga0222712_1000148734	F056571	N/A	LARSTAAEVNFRIDTIYGLLTEGQSRGQIVQFGSKQWNITHRQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI
Ga0222712_1000148743	F045713	N/A	MNGRIWEGNCTYLKCSDGFIEGRFIFPTPNNPEVLGALMSRLASGIEVIICTEDEDDDD
Ga0222712_100014877	F002317	AGG	MEHHEEVTASAPNPWNQAVPALLTAAVIGLGGLFMQVAKLDQSVNTVAADIQELKNDSKERLADLEGRVRQIEMTIGRRQ
Ga0222712_100014878	F003661	N/A	MDPTTAAVIAIAIAAGSEIIALLPVRENSWVQLLMKVLKMLFPKR