Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10001171 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10001171 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33454
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (58.49%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

33454

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (58.49%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F033783	Metagenome / Metatranscriptome	176	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000117112	F001215	N/A	MASTSTNKQPCLIDRPFLRGARITSATATCDPTNPNLTDLIQLVRVGDLPSEDAALVEDITIVSNEDYPDKSGIRTADIGLYVYAPNQAAPSTSAALMVGRFEVGLSGSTFGYPLPVQLFAVNAPVPKTGDTALVAPIQIGKGEGLYLEKGYILCAGYLGNGPTSVSGGLSSSGITVWAQGGFY
Ga0222712_1000117113	F034542	AGGTGG	VARKKGSDDFGFKSFKSSKSVEQPRDVRGADNTNELINPLPFKRRFRPATGTKDFSLLSDYDYASLWVRWRRGYELAMYSQQAYDGLTYSFKYFVSGSPGVGTFLPGIAFMYPTTRADMRMWMVGIRPRDSFNFLNFGYSIVSVTDYDANTYAVRLSSNFGAPVSFFTGEVLSNRFNADGTEKQYGYNNYTVTAVGINGVPVTPGFAPIYNTLFLSHTDANSWSVVNSTTMAVPATGPPAVGEYLTTEMRSQCTCPDFLAREGFNLYQASLRRKYPFTRVQNLDPGFYDAGPTADVRRVPSSDDPGFARTFGFIYLNEIYNIPDYTEAVYSDPNVFYYQPRWCKHIYAAMWDLQLRFNQTTTTSMWLSQPNDEPMNEYYREKFEIDLAKQTNFYRRERNLVWWQRYSPAKNDMPTHMMYPDMYNMMGKTLNFGNINSITAMQAQNFEMYTIDEFNPFAPINFDQLDIYDGGTYANGVLVSQPTNIFVGGQYANGTLIPPGGFPSLINGGTY
Ga0222712_1000117150	F033783	AGG	MRDTDFPIRMAGQRMGLEPYKLTGITPTEITRRLRYQEAFPRT
Ga0222712_100011717	F018919	AGGAGG	MAINPAQIAVAKIYPGNYTNVLRYWHSTSSFSFLNENGTNETYTNQPIGGPVGVVFRPGWIAQQAVGYVDLSYQASSSTNQLDYYTQPYGSGQASNQPFKAADVIIPSPDAYKDVRADITDGITVPSGAYVYRVSVRLDGGDVISSGIAGAQAAPALGVGPALSSGLTTAPSPSGFFANLVGSNSRIENGAFVSSNAWNDANMHVVTSDTKYRLYSTATVPGSGLGLGSGVYDPRAQANKLSGKNKALGICEVCWLIPDEAPKRDDLALQPAGLVESNVYTSTVPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10001171

Overview

Ecosystem & Geography

Associated Families

Sequences