Scaffold Ga0222712_10000905

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10000905
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37895
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (22.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y
F093376	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000090547	F056336	N/A	MALQYWIDRVRVNGGPTDVTVVPVSFVVANAYQHDQLNRLVAPEDEIIDMVEVAKNDWVFELKPGDILPVQIIASIQTTLDASKFDGMMFPVVYRGSPLLEKRFYKRSSSENVQQASMPIFNLNPVPVEIPV
Ga0222712_1000090551	F088364	N/A	MWLFTAFRPKNFQVHQMFKHSGDELIPIDEFKPGDQGHVDYYFGGQLYTHIGRWPLQNVKPRFSVPVHSAIFVNDEDRKPVVCTETVRRHSGPTQSPVSFDRYAPRPHVTFSFTGGFRISVGIKWVLVKKVSGTVHIQDVLGRQTSSTFGAK
Ga0222712_1000090560	F093376	N/A	MPSSVLQPGLLMVEDGMYFGPKNTNYVDIVMTDDALRSQTTSRNNKYYADKPYDFPELYIEKPENRFLPWDPASTYSMYQSMSYAKRYPTDKQ