Scaffold Ga0222712_10000903

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10000903
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37939
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (51.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004255	Metagenome / Metatranscriptome	446	Y
F024290	Metagenome / Metatranscriptome	206	Y
F041726	Metagenome / Metatranscriptome	159	Y
F043358	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000090314	F004255	N/A	MNLTEKAKIYKNVWCCAYQRRYMYRGTPREQREHETILMCLNMKDAKWEYFDSDKTYPTI
Ga0222712_1000090322	F043358	GGAGG	MKVYDYRIVEDLNLKTLKPYFFIQCYSIKDQKYFLYSDATFQTLQEAQETIRLLRKYKEPLYHYVE
Ga0222712_1000090326	F041726	N/A	MNTYRMLIEYWVPDEDENLYEEKIIKSRSSCGKIADDYLAQDRTNLIRSVEVFPV
Ga0222712_1000090339	F024290	N/A	MTLEEILEEYGQEVLDTYYELFPDKDITKFGDRFCGPVGEYSDFVLDCYYSTGSDELDETIESFESGVFQEYYYYDHKTSTAFVFYNER