Scaffold Ga0222712_10000637

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10000637
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45014
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (44.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F081258	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000063718	F053990	N/A	MMYSSSQGGFKMIDTCILHDDYEDFAQKFLGVDYEDYVSLQMGLPDEDEIEVESPVGV
Ga0222712_1000063732	F081258	N/A	MTFTFPRLSAGIYEVQKDSNTVGFIRKASASKWIVTDVVDTPQHVTKTLKDAKDACINLIIFEVDNTPADVYNDSVEVDKINSTLNNTLEGSLRTYRQIPGTDEFEEVCPSVFGFPGPTLEPIEF
Ga0222712_1000063761	F015080	N/A	MIMFEQLDFQPHEIPGAIQGRYKFSNGWSISVVSGLPGCGLYGSVFDGTFEVAIFQPNGNMTEDVIGWNTKEEVSAMMKVLVQL
Ga0222712_1000063764	F048940	GGAG	MTAAQRMEKQFFLHFIHLIDEVQGKQKLPSQIQSTRKSAWVKKVSNPKQKKDALARV