Scaffold Ga0222712_10000068

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10000068
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135567
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (47.57%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F002226	Metagenome / Metatranscriptome	580	Y
F010764	Metagenome / Metatranscriptome	299	Y
F011477	Metagenome / Metatranscriptome	290	Y
F016800	Metagenome / Metatranscriptome	244	Y
F018881	Metagenome / Metatranscriptome	232	Y
F020907	Metagenome / Metatranscriptome	221	Y
F035276	Metagenome / Metatranscriptome	172	Y
F048175	Metagenome / Metatranscriptome	148	Y
F077031	Metagenome / Metatranscriptome	117	Y
F093767	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000006811	F035276	N/A	MSKSYISCYNNETKELEHFEVSYSIFVYIRQLEDEIKYASGGVKKLYPFRFGDEE
Ga0222712_10000068159	F002226	GGAG	MSLISQKDREMVIEALEYYILKLKEDNCTQASITSFNTLLKWIELEHYKNEN
Ga0222712_10000068168	F077031	AGGA	MKQKPNFNVLFNLKISRKASIVAVAVASFLAFLTVKCDFSEKDVLKYYNELRKLIKWDLPDTMVDEFDNQLNQRINEDPELLQQKIENEVDYAIISYEIEEHRSRMINMRNQNILEEINKPKYDKLQKLIVENAIYYEFADGTMGIRGAWVAPDPREIPFE
Ga0222712_10000068175	F018881	GGA	MKPKLLNSDENCDEWCKEELLKCYKDAAEYDDVLFGDHDYSYVWLDKGP
Ga0222712_10000068183	F011477	GAGG	MSLAVIWAWVLANEAALATVLLVLSELLGAVPAVKSNGLVSFVIIQVQKVLKDKGAHDHT
Ga0222712_10000068197	F048175	GAGG	MASGSFQFRYNHSNENAAWHTNPDAKFILPEEDVDIRCDDPYLNENQFLEMVRRFFIACGYTEKQWKNALKEHLEEAEKTE
Ga0222712_1000006841	F001881	N/A	MTERAQEFMNAVWEHRNNGADTEEKLVAAILFTAAENIRSYTAQNDLIVLDKNDLLSLAEELNA
Ga0222712_1000006844	F093767	N/A	MLNLKDKIIEARLYSPHKCEFICEREDGTHYVYRRLDDEEYYELQPNPTGETKWLWGEKIND
Ga0222712_1000006857	F016800	AGGA	MLDAFTDYPIPSYGDIEGKKAPIRRATILTYDRNKYCDVLVYQVDGDGDLRGTVVNFKQFYLYKSYKEEPRHHEYIQFTDEELKTLPWTEISSPHSI
Ga0222712_100000688	F020907	GGA	MTNNEQLLNSLQGTMATIDPYSVKKEAIDEYRIDTVEERLTRIEDKVDLLITQLKIEFYKKNDGTSR
Ga0222712_100000689	F010764	GGAG	MIEIQKNYLLTLTEEQARELYQILDYERKNDKLGVDKELKLVYHELKNLFDTGIR