NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10565803

Scaffold Ga0222713_10565803


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10565803 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F045700Metagenome / Metatranscriptome152Y
F100533Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_105658031F000962N/AMNIHAPEELKIKYPQYEFRGKQREINNRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKP
Ga0222713_105658032F045700N/AMSNILKHAEKELQCFECETGTYKDITVNYFSQLSLDRSCVTKDVTIQRCDTCDAEIIDSKASQMIESNIERNFPGYYDKWKTKNKSRL
Ga0222713_105658033F100533N/ANKKELGYRNDTYEEAMKSRQRLIDIANKAHQTLSSLSDNDIFNFEGQVIIHKNQFIAIEESTYTEYE

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