Scaffold Ga0222713_10363024

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10363024
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 902
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_103630242	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAIAAARAVAECTNSNVAVHSVDEPTYPKSWK
Ga0222713_103630243	F017122	N/A	MEVTPFQQQLDPEVRLGEGRSRTSAEKTELFELKIWLPGQGAMRDLVRAESLQQALLFAANRYPNCKVEVPSQAAKKPRLVRSNNGPKESARRRLKLVESKNEQP
Ga0222713_103630244	F043896	GGAG	MNNPELADWARQNWGQVIVDHSRMDLLEKLYEWDGRSNPEHPNHHTYTGLYEKYS