NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10206216

Scaffold Ga0222713_10206216


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10206216 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057168Metagenome / Metatranscriptome136N
F071170Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102062162F071170AGGMEQLKELLTSSDWAAKRAQIAIKITEEYNSGQMSADEYAELLNDLKNTDKLNLQAEELEIKIKLEAAINTLLKFI
Ga0222713_102062163F057168N/AMKKIILSLFLAISLSGCVALAGLSTLLPSAWDPNQSAVITDIQQQSKRINCKWKIDKVKEHLEYLDEKTEWLIIYSETKQTTDIFNMAQVYNTTLQDFYKRVETKSMSNSYCENKKTILIEQSNIIAKTLQGRN
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