Scaffold Ga0222713_10173013

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10173013
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1468
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101730131	F001019	N/A	KMTHYEPSLEILEVNYSCSPGGIDTFEVYDKSEIEPVQLPIFETESLTEAVMFCYNLGKDFIVRTYAEWESRELASL
Ga0222713_101730132	F024786	N/A	MRNGRVESLPVYRVFGNKYQNYYTILDAADEFQAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSYNVQLNI
Ga0222713_101730134	F003603	AGGCGG	MKTKEHQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRVMEVVAWIIEKQAERYRREVANDGTVCEGLIIADMLDKMIDKIKVSNDLKSVQLPITPKERGEFVKSLPETKEQNYRYSWLHDTDNRTKVTIDHPFI