Scaffold Ga0222713_10164062

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10164062
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F014250	Metagenome / Metatranscriptome	264	Y
F019324	Metagenome / Metatranscriptome	230	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101640621	F001507	N/A	MNTTFKPYTIDELVTEIYEDNLSHFEFMENMNGGDCDCNLHYAMNLIVRYWGE
Ga0222713_101640624	F019324	AGAAG	MLGYTKEDLDEMTNAVESAMTTVNPDDDPWLHSRLYMASDLLKGLWAEGYFD
Ga0222713_101640625	F090399	GAGG	MNALIEYIKIHRISLLQDLDDIDYVNAHHFYKIKEAEINLCMHFLSVAEGMIE
Ga0222713_101640626	F014250	GAG	VYALLVSGRGYDRVMETTQLAPRLQKLIDMGESGTDILHGELKNLMLQAETELLYWQKVEEDTDYDDAMDSMERKYAEGLLDAYSNVYELTYQLAFAISDRSKTNG