Scaffold Ga0222713_10140604

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10140604
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F081267	Metagenome	114	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101406041	F081267	AGTAGG	MSKQYHWVVVYDENWKAFMVDAETTNVMLEEGDGTIYNKTTGHWEFAEEGSEELAEYQRLEEILAYNLTRLDLTAGIG
Ga0222713_101406043	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLPDDFIIQEARHNIMSYYKIDPEVLHLQDVIVHEV
Ga0222713_101406044	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTVDTDVIMTGIETYGVEVEIN
Ga0222713_101406045	F016662	GGAG	MYLVATTEVIYDEQYIIKEMLATGDYGVHGHPISHEAIVEFVKDREWQIEHHLFLDRYTDVPVQISIKDEDGTDVFFAKNKVEMK
Ga0222713_101406046	F043404	AGGA	MIDTDNPLLQTLADDFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIIIREKK