Scaffold Ga0222713_10136442

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10136442
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1711
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F027179	Metagenome	195	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101364422	F009266	AGGA	MTDKERKILDKEIHYLSEQQDRVKAIRQYTRINPGYTFQREAETIESLYKSVLEHRKHDKSMYFSCATSGWHVVYLRDKKTYKDGEKFRIKIFHTFTYTDNAD
Ga0222713_101364424	F060914	GAG	LKRLIKVRSDISASIYPIELYQVDDYFTAEEFGVELFRYKSQHLCSIKAKELIRQRKNEINAKIIERINELKAQGIL
Ga0222713_101364425	F027179	GAGG	MKMISMSDGLFLYKSSDGFVVMDENDNILKLSKTYQTCIRYILKTLNSRRAAEREAIEEINKSKV
Ga0222713_101364426	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDDK