Scaffold Ga0222713_10120171

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10120171
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1853
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011830	Metagenome / Metatranscriptome	286	Y
F029433	Metagenome	188	Y
F048984	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101201713	F029433	GAG	MTDYLVTSNRLNGHSRGDIIKAADLGDLTTDILFLVESGHLSPLKATKSAKPITTDTDKD
Ga0222713_101201714	F048984	AGG	MAAQAYTDLFNTAINNLATTLNAVSNLVCVTDVRNIQPPCILLDAMSFTAFNYNIVDMAIPVMVISLGPSNADAYRNCLNVAAMVLAAKVAVVSGNPTTLTVGGVDYPALALTIQMKAST
Ga0222713_101201715	F011830	N/A	TQLVVGESITVTALGSPFNSTATVLDLPQYEFTGIDSTTGEWIFDENVPRANQILYACTGSNVEYVVALAGLVTHTQNCTWITAAQILTWLGIATATADDTTFVTQCASAANAFCYRRRQECGYFDSLTTSPSGDVTLATIMYGGALYRQRGGISDFASFDGMSAGSTNGLSPIVKQLLGVDRPQVA