Scaffold Ga0222713_10119925

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10119925
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F038644	Metagenome / Metatranscriptome	165	Y
F041755	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101199251	F019468	N/A	MLRVYSFETMTIEKTYKLTIKDTAYFLTEEEVTKLYEQCRMVLSIKDLPTTNPVKPNIPYPYDTYPWYTPKNPNDTGYPYWTGPTTTCGTINAGEGNCVMDTNWQPNLCNNVKSSNDINFLSDDMAVHEDNQKWRSSVQQALDKLSAKTNVTTSDGTTIR
Ga0222713_101199252	F010317	N/A	MKSIYIEKLAEVDGGLPARNMDEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTMNSVYSYKFI
Ga0222713_101199253	F038644	N/A	MKSVKIKDLPNGPWREYALEAQRRGIEIVGADILSGTDITLIGAIDLIRELNERLTKLETKSN
Ga0222713_101199254	F041755	N/A	MNITAAKMSGEEILAKYPILNTKWKYSHHKDELNGYNGYYYSNYKDWSTEVVTDPWYRNLINNGNPIKKTESECIFSTTVEGNNIILIIYFKTY