Scaffold Ga0222713_10110600

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10110600
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1953
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045757	Metagenome / Metatranscriptome	152	N
F082697	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101106002	F045757	AGGA	MRNVFAILTLFLLSSFSYAQEEKKKEPVYTVISTKYVLTSTIIDDFFRAAKITTYSYNKEEINKVKIPKFQIWEKNFDDTKFLLEKFLNIKFETDEMKTYYMVNKK
Ga0222713_101106003	F082697	N/A	MHYEDLDDDQLLELQKQFEENRKVVLSMDPEDFLERLVKMHDSTDVILEGYDLVTNINEGHGIAIAGIIRLRNALMDSIEWITQNLLESDEEEEL