NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10102586

Scaffold Ga0222713_10102586


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10102586 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029748Metagenome187N
F030988Metagenome183Y
F043921Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101025862F030988GGAGMKHWNELTELETEIIRVGEFKNLFKLLVAGTENYVDIKVLQSAIYTLEGMIDDIDSTLYEKFQTVWDCVKDELPVVLTETENDYKFENGQSFDTMFSNITVTGSENQGSTCTVTSAEEDEAFKELEKAIKNWHKQTP
Ga0222713_101025863F029748GGAMMNFICGCAFGIFVATVGTSGVAKLIDNAVINFQGTIKESVREQPRQNNQQIKLESI
Ga0222713_101025866F043921N/ALFIMGVLLVLTGCGTVGGTLQGAGQDLHQAGQYIKNVGK

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