Scaffold Ga0222713_10102586

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10102586
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2048
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029748	Metagenome	187	N
F030988	Metagenome	183	Y
F043921	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101025862	F030988	GGAG	MKHWNELTELETEIIRVGEFKNLFKLLVAGTENYVDIKVLQSAIYTLEGMIDDIDSTLYEKFQTVWDCVKDELPVVLTETENDYKFENGQSFDTMFSNITVTGSENQGSTCTVTSAEEDEAFKELEKAIKNWHKQTP
Ga0222713_101025863	F029748	GGA	MMNFICGCAFGIFVATVGTSGVAKLIDNAVINFQGTIKESVREQPRQNNQQIKLESI
Ga0222713_101025866	F043921	N/A	LFIMGVLLVLTGCGTVGGTLQGAGQDLHQAGQYIKNVGK