Scaffold Ga0222713_10101934

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10101934
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2056
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033721	Metagenome / Metatranscriptome	176	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F066588	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101019343	F039994	N/A	MGVVEEVQSARDEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLRKGLPRL
Ga0222713_101019344	F033721	AGGA	MRWIKKELDEEGKPEWAVYIDQTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
Ga0222713_101019346	F039993	N/A	MKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGVIWRDVK
Ga0222713_101019347	F066588	GGAGG	MKKALVTQAFGDKWHKVLELTKPRMESYCQRHNIDLITFEKPLVEPVQYSKLAIGNIIATKGYEQVTFM