Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10100430 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10100430 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2075
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2075

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F007688	Metagenome / Metatranscriptome	346	Y
F009396	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101004301	F007688	GGAGG	VTANYKLDAMLELRKYLWQELYTRNIFDEEEYWSDNLNENIVPIIPVQQAAEMNQFLSGK
Ga0222713_101004302	F001900	GGAG	LDNSGLLVQASSGLERMMYSNQNGPLRDSTVAQISAFVYYEASVISKLTANAQFQSAFTKIMFDQINTDFGNYIDALARSKPKSLHHMYEWKKTGNKTARLFKLNRISENGLSFRINYSILPSKSMVPSSNSKRRHVFANKASVMEQGNPLVIRPKNAERLVFEYNGEVVYMPKGKSVTVKRPGGSAARNQFGLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALRVPSDIKRVQYSFSPNTIRSQADAALAASFGGAM
Ga0222713_101004303	F001229	GAG	MNSIVDSVLSMNLDVYRQSEIQDPDTGAIVREWNYYKTVACHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTSEKLTAREKITNIRDAEGNTIWNEIDFPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0222713_101004304	F009396	N/A	KSDEVYVVTPYIDFNHVQDLGFSMDPSDPGYKSYRELTQAEKYARKQIEQYTGQKFYLYDDLYLVYGYDSDVLPVPAKMYELHELYANDVLLIDTINNVDNWNYPVEISESGYGIKINRAGLLDNTVYTANGMVPPSIHDSAGVFQSGVAYKVQGRFGWERVPENVELAAIELMRDYFSKDTMWRNKYVKTISTFDWDFEYTGEAYAGTGNAYADRLLAEYVLTTKVEII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10100430

Overview

Ecosystem & Geography

Associated Families

Sequences