NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10098573

Scaffold Ga0222713_10098573


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10098573 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2099
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y
F017628Metagenome / Metatranscriptome239Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100985732F001915AGGAMEWTLAHPLHDVDDIVEMADSVFGKEADGILTRDRSVFRKNVTITSTVQLFDKGKEFLAVCRPVDKSVDNLLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPVKQRVRLIHEMIDQHILWASTWGIPVICSTSIRQEHDGFMKIHKKRGFTVNGSYAWARTEEVLKGLK
Ga0222713_100985733F012670AGGMKKPKDADILFGEIRPEGSLVTTPEELERKKHFMKMKRLEKRAMGLATGEQFPKEEKPQAQKGRTKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALSDFLTALRKV
Ga0222713_100985734F099270AGGMSTNFLYAQSPNRTGNVSKHAPSKSGGATNVTGPKHGVSGPTGQQGAPKAGGNVASRNQKVQVSTHADYCGTIKNDGYMNKSVKNYLG
Ga0222713_100985736F017628AGGMATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDDKKVLPPRSKDLPDEGSQVHFFGATNMPHPLDPQSD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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