Scaffold Ga0222713_10086579

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10086579
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2276
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F003603	Metagenome / Metatranscriptome	477	Y
F015988	Metagenome / Metatranscriptome	250	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100865791	F003603	AGGCGG	MKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRVMEVVAWIVEKQAERYRREVSNDGTISEGLIIANMLDKVIDKIKVSNDLKSVKLPISPKERNKIIDNLPNIEETNYRYSWLHETNNGSNATINVTPVI
Ga0222713_100865797	F082666	AGGAG	MIEQAEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNETRG
Ga0222713_100865798	F015988	GGAGG	LTKSSKFLEYMKIHLISLEQDLENISQEMELLDPESKACKELDYEYNHMAGQILNARHFLSVATDIMNETKEY
Ga0222713_100865799	F001460	N/A	NRMINAVHDAKLFYLRYPSDLMDKQPLRKDLEDAVSFMQGLWAEGYFD