Scaffold Ga0222713_10074356

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10074356
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030426	Metagenome / Metatranscriptome	185	N
F045742	Metagenome / Metatranscriptome	152	N
F072328	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100743563	F045742	AGGAGG	MKSRSEVKRKPRQSQAGRLARKHSGNGWCDIETNFPPSIVLAVCKQLEYESFGEGTDGVRAVTRRNARTLAALLEFTDLRVVDVAKLLHINRDQGWNLRRKWIDLDEEQRQRWLKVVFARLK
Ga0222713_100743565	F072328	AGGA	MISILLVAALAACIVYIVGSSDPIDHQCGVDLKYQNNKKGPTK
Ga0222713_100743566	F030426	AGGA	MRSTITTTPQAAVNEILGSIAWRHLAIADIDNLDEDPVDQYSRIKIREALAEAFLAGAAWGLDTRKENNK