Scaffold Ga0222713_10066715

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10066715
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020909	Metagenome	221	Y
F033806	Metagenome	176	N
F054028	Metagenome	140	Y
F089589	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100667152	F020909	GGAG	MITKRGKQVRAVAIALGIILIWQVSANLWWVGIDAPSAQFLGWCWGSMSQCVVL
Ga0222713_100667155	F089589	AGG	MSNRLWVDDNGTVLCDEHAGTYLRAGFEANNQAIQHKTPLGTWCAYYTNLLGGTDLVCETCVPWNSPNHPYNRNKAGA
Ga0222713_100667156	F054028	GGA	MKLNVTDTKVTIKWFAVLSDGSKMRNNKGFVHNAWDVICSCGWETRTGGAIKASVMRDVEFHKITEHNYTYKVGA
Ga0222713_100667159	F033806	AGG	LSFEKKPREPLFSLHNHSDGHIALYLEEQNAVKDMLEDVVGNFDHKMLMELQGICAESVKAEGHFDRLETARENLGDGAPLLCSMTEQEALILAEDLIRAVKFGRIGREAQGNYPSLKVV