NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10064815

Scaffold Ga0222713_10064815


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10064815 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2727
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F082675Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100648151F008496N/APASVTQMPESNATFVKELVEAGELKPLYDPKATIIVRKGYYYGTPSDSKFDLENADDISRTYWRLDAVQETNNRNSRAQDKLKDYLVENYDEIGEEHATEIANIFSIDLSKEVEVEFNVTIKATVSIPVNEDVSDLSTYDFDITIESNESKYEIQDFDADIDSIDERY
Ga0222713_1006481510F007525GGAGMTKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYAQITYLDRVVDVERGGEMSLSLPNLVNGELSDEDVTIVRYSDDLEAAGINDDIQLMQFIKTVSNAGFEIYRMNPWWEVFSHNED
Ga0222713_100648153F043404AGGAMIDTTDPLLSELADHFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIIIRGKK
Ga0222713_100648156F030094GAGGMNIRGIFEGTFESVWSMYVPDDLYKSYMDSHPDFDEHDRDDIQEMWEHFKSEGCYDEIDDSVDTDVIMTGVEL
Ga0222713_100648158F082675AGGAGMSKQYHWVVVYDEDWGCFMVDAESEQDRDKIMYDKETGRWEYLEEGSAEEAEYYRLEEILAYQMTRLDIPKKTG
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Institute for Fundamental Biomedical Research
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