Scaffold Ga0222713_10048338

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10048338
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011750	Metagenome / Metatranscriptome	287	Y
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N
F039047	Metagenome / Metatranscriptome	164	N
F054855	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100483383	F039047	N/A	MKMKIEIDINDIVALKVALGNAERRINELMNDKPDWRTLYQFDKNSVEKAQKILANVIAN
Ga0222713_100483384	F029747	AGG	MKYELILVTEACNSFSNYDHTRQGLEKALDRVDKERKKAGFQCAKIVSDRDGEVFSLDLSFGALTFVS
Ga0222713_100483385	F038235	N/A	MIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDKGAVVGFRAWKMPDTGADERMGWRSFRFDRIQNRRLTFV
Ga0222713_100483386	F011750	N/A	MLTIPLSSAKILPMQKNWIPRSHRWSPAEREQKKLQAQNVRQIRWMFWRESQVLREEIQKEISEKLLAKRAAIE
Ga0222713_100483389	F054855	GAG	MKSPYKQLVLVEFRNCSPFIYNIISDKPISIDKVVQYFIDAEDFNDERDSITFIDEITEVKL