NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10039950

Scaffold Ga0222713_10039950


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10039950 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3681
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F005177Metagenome / Metatranscriptome409Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100399501F005177N/ADENKANDLTIYSEQGVDKEYLTELVFSNMRKFDGTIRAYVYDNLKKKKTTALIIPAEFIPKKSPLTNLLA
Ga0222713_100399505F000980AGGMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGNNCTLLSVEDATIPYTDSPLPTKEDNMETTETTVTTVPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKRVSVLNDKISAVKEIICEAYADSQDQDTLREIAEALDIELIKEVEFTASIEVSGTYSYNILESDYDFDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0222713_100399507F007470AGGAGMDYQDGFEDGVKFAREVIINNIRLWAESSDEGQVMDDVADRIEFGTVDYDL
Ga0222713_100399509F001125AGGCGGMGDRANFGFQDRKGDTVFLYGHWAGYKMLENLANAVSKAEPRWTDESYATRICISQLINEDWPGETGWGITINELADNEHRVPVINWSKQTFTLMEEDLKTEVFSLPLSAFVTKYSQLVM
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