Scaffold Ga0222713_10038393

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10038393
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3770
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1003839310	F030690	AGGA	MQRSEIEVICNHMLGRTIVSCEAEHGDSTIIIQLDDDSYIEISGEELSVYGELTPRDD
Ga0222713_100383934	F003066	AGGA	MDKQPLAYLYEEFDVKSGDLKKSYLWSFHPNQLSYMNDLKNTTHHIKITPLFPGEPVEEYKGLSRYDSKKLTEAHGGL
Ga0222713_100383936	F011384	GGAG	MYTKLDDQRQAKFIIKYIEEHPGCSIKQIVQQCVTNRTRLKYLESQGYFSLPKWTYSNELDKRFKNRHYVSVEVGREYGKWKGY
Ga0222713_100383939	F002037	AGGA	MSKIYWIFVIVMAALAIWGTEKALAQSTTILAPDGSVTICQTGSNGIVICV