Scaffold Ga0222713_10037763

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10037763
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3807
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F039133	Metagenome	164	N
F057375	Metagenome	136	N
F081334	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100377632	F039133	AGGA	MNTTDKVIVKFKSRVPKMLYTAHYNGLLLASGRDPIDLGEYYACKYCTEWILQDGNNFYTQRGVNK
Ga0222713_100377633	F057375	GGAGG	MAETAYFVNARDLFEAIELGDCEQDEFLDQFTYGGNDTSLTLIQKQTFVNRLVKFIVDCEDVYEKDEMMQNLKEYNFGLLDCIKYVNIEN
Ga0222713_100377635	F011390	AGGA	MEIKTTNYGVCKVKKHKYQTNGNLALSLVDETGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVSSGLFVQTGEKVPSGYCEYPVCKLVKEVA
Ga0222713_100377638	F081334	GGAG	MEILIKENAANNYMRRCYKGTRPDAVGLHNEGFYNILKNLQGKWVTVDTTHLFANQFNTVPVEGITDTGARIDMADVAEIKDDVRHGVYKCVWCYGYDHNKDGLCDRCEQSKYLAPLLPSIAK