Scaffold Ga0222713_10032001

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10032001
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4227
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024743	Metagenome / Metatranscriptome	204	N
F034825	Metagenome	173	Y
F047570	Metagenome / Metatranscriptome	149	N
F075864	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100320011	F034825	N/A	MTTLEQLVADHTILIQKIIAEAKNEALNDASKAKIKTTNVIDAPVQKLDLFSHISSTFDNLIKDKKEKNILTPYVNPYNWPRNTNCWAKSLDLTGYAAAVVPLGGV
Ga0222713_1003200110	F075864	N/A	MNPDPNLWIEIPQEVKDAALLLGNYFKKQNIDNWALYDVSSRKSVDNLENQVKNLETWKNKQVNGFID
Ga0222713_100320018	F047570	N/A	MKMTNENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGTFTEIDSLFELAKELKEMNKEE
Ga0222713_100320019	F024743	N/A	MDVVTLSNLYSHASGAYNQAKDAQDLIIMMNVLHLRLEHNMAYQKIAKRCGIKVNKVKLILFNYESRS