Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10031335 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10031335 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4282
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4282

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1003133510	F016662	AGGAG	MTYLVATTEVIYDEQDLIKMMLDTGEYGIHGHPISHEAMVEFVKDQEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNKLEIK
Ga0222713_1003133511	F043404	AGGA	MIDTTDPILNELADHFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIIIRSKKQ
Ga0222713_1003133513	F008496	AGGAG	VDYPIPASVTQMPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDAKYDLENADDISRAFWRVDALQSTNNSNSKAQDKLKDYLVENFDEIGEEHANAIANIFGMDLSKEVEVEFNVTIKATVSMPVNEDVSDLSIYDFDIEISSNESKYEILESDADIDSIDERY
Ga0222713_100313352	F007525	GGAG	MTSLTGVTVTYTEKIPTSKQMPEFYVWGEGYESYATIRYEDRVVEVERGGEMHLTLPNLVNGELSDEGATVVRYSDDLEAAGINDDIQFMQFLKTISNAGFEVYRMNPWWEVFSHNEDMGEVYDTFYEAVDGGIDYILDDRNW
Ga0222713_100313358	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQTEWESFLRHHPDFDENDRDDIQEMWNHFKELGCYDECDDTVDTDVFMTGIETYGVEVEIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10031335

Overview

Ecosystem & Geography

Associated Families

Sequences