Scaffold Ga0222713_10029656

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10029656
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4430
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y
F041194	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100296562	F024548	N/A	MKSADNVVELTDSDIKKYTKLKEGTKIEVDDLVHVYDNTYAKLSKGNLVCKENVSKFNIILRKK
Ga0222713_100296566	F024308	N/A	VKKLILTKLEYDFLTECLEKLEKHTDDSPADSKWLEKMDTTRRLYELEMEHFNIKKYGEPSTKYQMVKWILTKVKTKSLDF
Ga0222713_100296568	F041194	N/A	MLCTMEDITISCNYCNTPAKIKRDKIYMQCHCDDDRRIIDIREYLLEDKHHDYLYSMFNDEYEYVNVK