Scaffold Ga0222713_10027624

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10027624
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4634
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F026503	Metagenome	197	N
F054669	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100276246	F026503	N/A	MIDIKTSFSQLEMQLHLLAKAAKVDLGSVIKEEAKYAIQTIVKFTRPKQKAQGVNAVRGDFNKLAEPLVYQDLQAKATEGGFYKSMARYVRNRKVEKLRLLLNNPKLSHYYGKPLLESEDAIKKYHRSKRNANGRIEGKPRVLAFGLDFRRVRKTMEDRVGWSVSGWRSSAIVTGARYKKFSDKLKPQAGGNTLFGSVRSAFGPDPFIKATASNVKISNYQRMIDGTINSRIKTTTRKVAAVLANRAVNLGFTRVGGAMPIKTPTA
Ga0222713_100276247	F016125	N/A	MAAVRDFDPTQINSDFSAILAQAGISFTYQSTSITGVWSSSRDAFADFEDQRRDDSKFTVFLLTSSVSAVPQVTQTLSRAGITYFIERVTLDAEGAGCEIEVCKSI
Ga0222713_100276249	F054669	N/A	SVSFRDAWLSTAAEPDRIEHRFLVRADDAETINMAKQFLHDVGEPSAADPGVIQVNAEDGMVAPHGWDERILASGCTLIDAENIEQILGTKKP