NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10026811

Scaffold Ga0222713_10026811


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10026811 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4720
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F017628Metagenome / Metatranscriptome239Y
F027490Metagenome / Metatranscriptome194Y
F098944Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1002681110F017628AGGAMATYDIEALKVDLPTARDLAQFVYDKTDGTVSLDLIGKPKEEQYIAAKNALEGKKVPNEFLTGFNPYVEKKDVIPEDPLKKVPKRSIDLPDEESQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITY
Ga0222713_100268114F001915AGGAMEWTLAHPLHDVDDIVDMADLVFGTEADGILTRDKGVFRKNVTIATTVQLFDKSREFIAVCRNGEKLLGYCWFDRGGYTTYANEEISNAKFHHVDLTLSPRLRVKLINEMIDQHILWAHTWSIPVVCSTSIRAEHDGFMRIHQKRGFSVNGSYGWIRTEKGMECLKK
Ga0222713_100268115F098944AGGMFEEIRPEGSTVSSAELKRKAREYGRAKRAEKKAMKLATGKIEPKEAPEPEQPKDEYDLSSFVPRSQKTNLGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNEFLDSLRKV
Ga0222713_100268118F027490GAGMYGKVINGGAQMRKGVSKGINDKLSSRSAEDSRRATVAGAVANAYKVNTISSQHTNGTKGGNFVKPSNRSKDIPV
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