NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10024535

Scaffold Ga0222713_10024535


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10024535 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4984
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023351Metagenome / Metatranscriptome210Y
F059006Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1002453510F059006GGAGVNTDVFNDAERAHIIVVKDLVKSKLRELLSDLPTDSYAYFKESILTGGCFASLFNSETPNDWDVYLKNVDTADRFESFIMSDTPTLNEVKDLNPGYMAEVKVRGKLITANAVTFKNGLQVITRTCKAHRETFDFIHCMPYFDMATQQLFISRRQYDAIKNKKIIQNPNHKEQPALHRLDKFLERGWTIGA
Ga0222713_100245353F023351AGGAMVKEAKGGVFAPSDYPVIKRALHSYLLDLMRVEGYSDRDPHPDVAVISNLMHRLGRVDA

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