Scaffold Ga0222713_10020714

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10020714
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5530
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F003663	Metagenome / Metatranscriptome	474	Y
F021481	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100207141	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPAYATRITISQMINNDWNSETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDKDNKVNGMSNEAIFTMDLSNFVEKYADVV
Ga0222713_1002071413	F003663	AGGTGG	MLSTAIEILEATKNSIFDEDIMGMAGELHTRRNELPDEVYAKYLFMYSAALSSKVADLVTKILLTEQEMSDLIATIDEMDNLSETILEEDNNGE
Ga0222713_100207145	F000980	N/A	MSVGSCTILAMTTYNKYTWVCTGDCDGLFELTFKDGFGWPGGVMEYTCPCGSNCTLLSVEDATIQPTETKGNEMETAETTVTTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKRVAVFEDKVSRVKDIIGEAYADSQDQDTLRAIAEALDIELTRTVEWTASIEVSGTIEIDLLSDYDTDYELESEITDSIYADSHHGNIEILDQEVCNVRES
Ga0222713_100207149	F021481	AGGA	MSPILDVAKGRFYRKGDIFTTGKSGITGTIAEIIAVRPNLTKLRLDTGAGMRYAMVKIGK