Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10019240 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10019240 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5781
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5781

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F015597	Metagenome	253	Y
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001924014	F000957	N/A	FQHLDGMLALLSELYEINERIMCGDIVSAKAAIASTRMKKLLNHYHEALSEDGAEAITLDVYVAAGGWVGLTYSYQLSDGFVITGSQTPRRV
Ga0222713_100192402	F065732	N/A	MEALDPETIAWGKRIGISPERLAFLAACPKFTRTGRNDKPAYIKTENPNHHLQKLGACWWLRIRRRKTDIIHNLGKDLDTARKHRDEMLAAYDAGKPIPHLDS
Ga0222713_100192403	F058813	AGG	MSNMSAPTLVLISGFARAGKDTLATGILEWARRPSRKTNFADYLKDAANDYLLSLNLEGNFHDERFKVLHRDFLVAAGKLARSLDVDIFAKNLANFCPIRMSPDDLAPETVVCSDLRYANEVAVCQDTLHDLGWRVRTIYVATAGIGPANQEELDSICEIREKHAFDLELTFAPNSRNTIMQEGRYIAKSWRL
Ga0222713_100192405	F001338	N/A	MEPNNDRKPLKSIETAGTYKLKLIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGKFTEELRLDATPAEFLEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPVVNDLPGPDEVPY
Ga0222713_100192407	F098917	N/A	MTNREYLRNILGQLAGEVQALRPASHDARGVQSDDLQSLHDAINAAAAELEQLDVENIEEAYHIKPLYDRIKAVVAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHGPNDDDAAL
Ga0222713_100192409	F015597	N/A	MSKPSDDFDPFDPIAGAMRAMHQGNMLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10019240

Overview

Ecosystem & Geography

Associated Families

Sequences