Scaffold Ga0222713_10015846

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10015846
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6511
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F003965	Metagenome / Metatranscriptome	459	Y
F011487	Metagenome / Metatranscriptome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100158461	F003965	AGGA	MNSTIIKCVEHNPMKSAISEYADTQFTFCQDCEQNIERWYDDTDPERLPMWRDWKVSN
Ga0222713_1001584614	F011487	AGGAG	MANMYEDEMFDEYYSTTCPQCQENAVDAYEEKCTHCLLEEMSAHYNEDIALEMSLGLDY
Ga0222713_1001584616	F000684	AGGA	MTLSGYTYQVGDLFTTSKTGITGRIAGFTPMSNKVTRVNLVLANGSRRFAMVKTSK
Ga0222713_100158468	F000447	AGG	MGYVEIFRIDNEGAGWIDLSQATSDELFNLEVGLLNEGALFTTKEAN