Scaffold Ga0222713_10014686

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10014686
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6816
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F011215	Metagenome / Metatranscriptome	293	Y
F025271	Metagenome / Metatranscriptome	202	N
F035287	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001468610	F025271	N/A	MTPEYTLQAACVKLFKLLKPQEEGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSDNGAIFLEFKAPKGKQSLSQKWWQGVVEAVGYRYVVISSVEQFQKLLDECS
Ga0222713_100146862	F011215	AGGAGG	MNLLQQMNAAEYKKLLDFKATYPTIGEELVKALSEKIVPIQLTLGECIDLSNATGIRIAESCNQIFDTFKSKP
Ga0222713_100146863	F001981	N/A	MTYLPIITIPKADICKAEIAQIAQQLTDRINEGEVNPIEAHIKLKAIVKACEVAIKQTEQTVADEASKHGKTFQAFGAEVTLKEGSLTPNYEEDPTYADLKAQLKEREEILKLAFRQAGKSAIFDESTGEQIPVCTAKGTKSSIAVSFK
Ga0222713_100146864	F035287	N/A	MAVKTPPKKKKGIQKIGRVAGVQAAMMLLEKPYRATQLAEALGMHIRITYRIIDDLRATGHLYSHRCYYWFDPKKNNDLQHLIPIKDPNL