NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10014686

Scaffold Ga0222713_10014686


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10014686 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6816
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F011215Metagenome / Metatranscriptome293Y
F025271Metagenome / Metatranscriptome202N
F035287Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001468610F025271N/AMTPEYTLQAACVKLFKLLKPQEEGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSDNGAIFLEFKAPKGKQSLSQKWWQGVVEAVGYRYVVISSVEQFQKLLDECS
Ga0222713_100146862F011215AGGAGGMNLLQQMNAAEYKKLLDFKATYPTIGEELVKALSEKIVPIQLTLGECIDLSNATGIRIAESCNQIFDTFKSKP
Ga0222713_100146863F001981N/AMTYLPIITIPKADICKAEIAQIAQQLTDRINEGEVNPIEAHIKLKAIVKACEVAIKQTEQTVADEASKHGKTFQAFGAEVTLKEGSLTPNYEEDPTYADLKAQLKEREEILKLAFRQAGKSAIFDESTGEQIPVCTAKGTKSSIAVSFK
Ga0222713_100146864F035287N/AMAVKTPPKKKKGIQKIGRVAGVQAAMMLLEKPYRATQLAEALGMHIRITYRIIDDLRATGHLYSHRCYYWFDPKKNNDLQHLIPIKDPNL

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