NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10013970

Scaffold Ga0222713_10013970


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10013970 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7037
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049633Metagenome / Metatranscriptome146Y
F051131Metagenome / Metatranscriptome144N
F052593Metagenome / Metatranscriptome142Y
F073556Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100139702F051131AGGAMNNTFIYSYKEFISFATYEDVTNRDSRVFEANEDLTEDEINNYLEQASQRILTQIRNTDWWREYQRRMAQIINPNLLPAVNPDYILARTQEFIDLNVYFALFEYVYPSVADFGNPDSAEFAKIKFYKDSYNLLFDELIEAGDWYDFSENGTIDTSDKMAAFVNRVRTR
Ga0222713_100139703F049633GAGMRTELLTYLTANLTGTIKTSQELPFQEGTNPLYMKNARRVYLDEPYIEEDSLLPTLGSLNINERITIIRWFLTMDAKNRNADLDSALTILGSAKDITTITGVYKRLFDYTITIDADRVVYEGQYRFYNLA
Ga0222713_100139704F052593AGGAMAYIFPAPGVAGVQMTLNISVSGDTSDLVIPAIQNVTVNNSNDVFTWTQLDSGSKLQVATTATNSLDLNLVLDQTVFFGTGSGTPVAINKGIFGLSKNKTLTHFSLYLGDTSSGGTGKTISGDGYITGLSPTVSADSPVWISPVTITVTGDYTVT
Ga0222713_100139705F073556N/AMEVSMIFDDKTDDEIFRSVEAEVAKALNEIRCAKRDLEQAEVRMKFVLATVHYLKQRYEG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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