NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10012806

Scaffold Ga0222713_10012806


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10012806 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7418
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F001923Metagenome / Metatranscriptome617Y
F003714Metagenome / Metatranscriptome472Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001280610F006659N/AMKKDSKPSPEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAAEQPK
Ga0222713_1001280617F003714N/AMPNANHPYVDSLTFAGRPLPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITGTTWVNLKKRGPYNRQK
Ga0222713_100128062F004790N/AMETLNPETLAWANKVGLSPDRVAFLLACPKFTRTGRNDKPAYIKAENPNHHLQKLGDCWWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYINVR
Ga0222713_1001280620F001923N/AVSPSPPIDPETIPKELKDGVVASVLGGLAMTARLLLSTEPVSFGWVVRRVLAAAITAAMVGYGIQDHISSPGLRMGVVGAAGYAAPECLDYLMRYIKARGEKEVAAVAGKPKSNGKAKAKPAKRKR
Ga0222713_100128064F001338N/AMNPPNNDRPPLKSIEVSGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKPLAMLVGKFAGKFTEEIRLDATPAEFLQYIEPACGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVQEAPPENPPF
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