NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10011463

Scaffold Ga0222713_10011463


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10011463 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7915
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F002038Metagenome / Metatranscriptome600Y
F002413Metagenome / Metatranscriptome561Y
F003714Metagenome / Metatranscriptome472Y
F005588Metagenome / Metatranscriptome395Y
F006659Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001146313F006659N/AMKKDSKLPAEYRIIADSSYIVLPDQKVARLLTPTIRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKADATK
Ga0222713_1001146318F002038GGAMTSTPAGIERIARTIKGQYALLLLLDGYPYVEFTARKHADFLSDIGMWKRKTHPSLARSQVRFFTLAPSGEIKELTFNR
Ga0222713_1001146322F002413N/AMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLEGNFMAEDFKCENRDALVAMGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL
Ga0222713_100114633F003714N/AMPNANHPYTETVTFAGRPLPLKRPMAVFAARRLEAILPQIAALNAAGKSQSDAAEALDTTVCTLRTWLDITNTQWVNLNRRGPYAKRTK
Ga0222713_100114636F005588N/AMTIIRPNKMPRFWWLCPWAYARTLHMSANAVKAYADRLDDILDIQRSIIEDQSKEIRALKARVADLNDAIIRGTAITPDAHPHE
Ga0222713_100114637F000957N/AMSNFKHLDGMVALLSEVYEINERIMTGDICSAKTALASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
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