Scaffold Ga0222713_10011200

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10011200
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8022
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F013524	Metagenome / Metatranscriptome	270	Y
F019824	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001120018	F009135	N/A	MSNPRYYLKVNLPPNFNELDAEVIKKELMTYINSRNQWGALYGPKSTKKGITIEKVMYRTNED
Ga0222713_1001120019	F013524	N/A	MKTNKEVVNRLREFTSYNCNNLLDAKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKKKLEKCQLKLSNYEPF
Ga0222713_1001120020	F008688	N/A	MLGSLAAIMLTAMSVEPLKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE
Ga0222713_100112003	F019824	N/A	MDKYITNNFAGSVDDLLNHCSNLDVNKVEEQVKAEEKEECIRVIKQEFDCNDYEAEVIYNEIALNEVKETVDKMVAEGLLYLSGHNEDGEPLFSLTELGKSIQSELNK