Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10010034 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10010034 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8565
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8565

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000852	Metagenome / Metatranscriptome	860	Y
F007470	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001003410	F007470	GGAG	MDYQDGFEDGVKFAREVIIANIKLWAEDSEDGQVYDDIAERIEFGTVDYDL
Ga0222713_1001003412	F000450	GGCGG	MGDRANFVFVQPNGHSIVLYGHWAGYQMLQNLAEAVIKAQNRWSDPSYATRIAISHMIGEGWAMETGWGLAVDEILDNEHKVAVVDFQQQTFSLHEEAPYADESNKVRGMSNEAIFTQDLSTFCEKYSDQLVRV
Ga0222713_1001003417	F000263	AGG	MNAEDIGLPPHLQRMVNSGVTGLDIMHGELKNLMLIGEQDLIRAQEAEDKSEEAMDSMERTYAEGYIDALTSMYKLTYDLSFAIAEKENANV
Ga0222713_1001003420	F000441	AGGAGG	MKMSDQYIDEVLAKAQQLLWGGSETENIEAHNLISKLIRDRMEDSESGAE
Ga0222713_1001003421	F000852	AGGA	MTTKREYLKQQGITVGARGRFSGAAKTAIQEAINKGVQFTPEKPQKAK
Ga0222713_100100349	F000311	GAGG	MYFELTAPNQGALKGAFWDAELLGLDPQSIAPLTFNIGTGSIEKVSRLRDKYNLTESYTSEYEPTGYTGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10010034

Overview

Ecosystem & Geography

Associated Families

Sequences