Scaffold Ga0222713_10009561

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10009561
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8820
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F008131	Metagenome / Metatranscriptome	338	Y
F021111	Metagenome / Metatranscriptome	220	Y
F044483	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000956111	F021111	GGA	MDNSKNTWTEIQTNGGTIKETDAMGREKFWEDLGRPDDGK
Ga0222713_1000956112	F002489	AGGA	MTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGYLLGPSPSFTPTETNEETIR
Ga0222713_1000956113	F044483	GAG	MKKLYVDQITRAMNTAEKDNYQDVVYATAALKWMVAKIESQLNKCLNVEDGQCSLTWKHDDCKLLMDILYDLTEDVKYKEKTWRFDP
Ga0222713_100095613	F008131	AGGAGG	MSVKRLVPLHAVALDDNPAQARIGDIYYNTVAEELRYFDGTDWNPVGAGTVTGLLDHVHTYDGAVFSVESVEVPASGVIDGGTA