Scaffold Ga0222713_10007385

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10007385
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10310
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F062765	Metagenome / Metatranscriptome	130	Y
F065787	Metagenome / Metatranscriptome	127	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000738510	F062765	N/A	MGPVNLQWYRERGLTQVEHKVATEDSMLYNHSESYTSETITTYYACGRIDVRGIPDEPYGDEIGVPPMLGTDWQLFSDWLDTVQTMSVWSLEDLVTAYEHRNNTKITWADK
Ga0222713_1000738512	F081346	GGAGG	MAKPDPNKPITHINPPTQVPTRVMPHKPGYDEVVVVPETEANPDKPKKPKKKPSK
Ga0222713_1000738518	F024558	GAGG	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNKPVGFKGEKIPVGTVGNEDMPTVRIRYEKLRWRDDSLKTILVTPDEELALSLTPEWLPGQRAPIQLYLKTVRKMHDELIKQIRKNQS
Ga0222713_1000738522	F065787	GGAGG	MKTGYLEIRESCDLVEYDLKFAGKGKLWIEVYRDQEYEYRALFPDLDDWSLMPMTILTQKLHETQPNLS
Ga0222713_100073854	F004133	AGCAG	MGPMKYTKEITDKLIADYKAGVVVADIATRLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIEAKLSQVDPKPPKSPKTHTDLELFALN
Ga0222713_100073855	F033434	N/A	MLFKKQELHSLDFSGTEGLNTAGWETWCESVQLSHLHTWLLPQLVAWYGNWTLVYSGSHIDCLATIKHNCPDPQSRAFYMLSRVKRSLLVATQTKFPDYATLTPLIMMGLKRMKGVDYESWKNSSGLQYILEPRLFDAVMLSPEDLEICSSLGSDRLLEIQVQGLTTKSGKTAGTMKPAKSTWSLTGIQDTEIGHLPKITQTILTQCWLAHPELRTPYMILDLENWDNLPKPLVSNEIFKQEPEQKLTKVKEAAEVLPWDL