Scaffold Ga0222713_10006831

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10006831
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10781
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F039639	Metagenome / Metatranscriptome	163	Y
F062765	Metagenome / Metatranscriptome	130	Y
F078723	Metagenome / Metatranscriptome	116	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000683110	F062765	GGA	VSLGWYRTRGLTQTQTKIGTENTMFTTEGEPYTSESITTHYSCGRIDVHNVPGEPYGDEINVPPMLSTDWAMFSNWLDTVKTLSIWTLEDLVTAYQQHNPKITWDTYDG
Ga0222713_1000683115	F081346	GGA	MAKPDPNKPITHINPPTVVPTRVMPYKPGYNDQVVVPETEATPDKPKKPKKPRK
Ga0222713_1000683118	F039639	AGGCGG	MNIDREFIKWFYEDAYPEQGSNRRQCYGMTAGTTNIDTIDYWMREAFKAGAYAATHDYEVNALEQFEAFNINRNYPL
Ga0222713_1000683119	F024558	AGGA	MIVVLYTEDLEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFKGERIPVGMVGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS
Ga0222713_1000683127	F078723	N/A	AQTLKTHLCTAWSCVIIESSFTHQTSMSYDILINSLVNGESVTVSKPDGTTYQEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELMDSITRLQEQNKRLQDEINTKTSAVASAAGDSDSSTT
Ga0222713_100068314	F004133	GGA	MKYTKEITDKLIADYKAGIPVADISAELNVPERSVIAKLSSLGVYVKKSYVNKRGETPVKKSEHIERIAELLQVDEELLESLEKVNKTVLKLIEHKLAQSDPKLHQQRQSDDIFALN
Ga0222713_100068315	F033434	N/A	MLFKKQEIHHIDFTGTEHLNLEGWETWCEQMQLSHLHQWLLPQLVAWYGSWTLVYDEHSNYDCLATVKLNCSDPKSRAFYMLSRVKRSLLVPQQTKTPDYATLTPLILMGLKRMQGINYETFRTSSGLQYLLEPRLLDAVVLTTEDLEVCGGLGSSRLLEIQKQGLTTKSGKTAGSIKPARSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDLQDWDRMPQPLVTNDIFKAVQTQQPKQELAGVLPWDL